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Dr. Ajay Kumar Mahato
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Home » Genome Informatics » Publications
Genome Informatics
  1. SS Paul, SV Rama Rao, RN Chatterjee, MVLN Raju, AK Mahato, B Prakash, SP Yadav, A Kannan, GN Reddy, V Kumar, et al (2023). An Immobilized Form of a Blend of Essential Oils Improves the Density of Beneficial Bacteria, in Addition to Suppressing Pathogens in the Gut and Also Improves the Performance of Chicken Breeding. Microorganisms. https://doi.org/10.3390/microorganisms11081960.

  2. RR Das, A Kumar, Ashish, DS Baghel, AK Mahato, N Dey, PK Mukherjee, S Pradhan (2024). Whole genome assembly of the Little Millet (Panicum sumatrense) genome: A climate resilient crop species. bioRxiv; 2024.02. 26.582036,2024, Cold Spring Harbor Laboratory

  3. B Disha, MP Rohan, AB Dalal, AK Mahato, K Satyamoorthy, KK Singh, K Thangaraj, P Govindaraj. (2024). Mitochondria in biology and medicine. Mitochondrion, 101853.

  4. B. Singh, S. Singh, AK Mahato, HK Dikshit, K Tripathi, S Bhatia (2023). Delineation of novel genomic loci and putative candidate genes associated with seed iron and zinc content in lentil (Lens culinaris Medik.), Plant Science,335,111787.

  5. M Srivastav, N Radadiya, S Ramachandra, PK Jayaswal, N Singh, S Singh, AK Mahato, G Tandon, A Gupta, R Devi, H Sreekanth, GG Kumar, P Prakash, S Singh, N Sharma, A Nagaraja, A Kar, SG Rudra, S Sethi, S Jaiswal, MA Iquebal, R Singh, S Singh, NK Singh (2023). High resolution mapping of QTLs for fruit color and firmness in Amrapali/Sensation mango hybrids. Frontiers in Plant Science.

  6. R Singh, A Singh, AK Mahato, R Paliwal, G Tiwari, A Kumar (2023). De Novo Transcriptome Profiling for the Generation and Validation of Microsatellite Markers, Transcription Factors, and Database Development for Andrographis paniculata.s 24,9212. https://doi.org/10.3390/ijms24119212

  7. A Singh, AK Mahato, A Maurya, R Subramani, AK Singh, R Bhardwaj, SK Kaushik, S Kumar, V Gupta, K Singh, R Singh (2023). Amaranth Genomic Resource Database (AGRDB): an integrated database resource of Amaranth genes and genomics. Frontiers in Plant Science. Volume 14 - 2023 | doi: 10.3389/fpls.2023.1203855

  8. R Singh, AK Mahato, A Singh, R Kumar, R Singh, A Kumar, S Kumar, S Marla, AK Singh, NK Singh (2023). TinoTranscriptDB: A Database of Transcripts and Microsatellite Markers of Tinospora cordifolia, an Important Medicinal Plant. Genes. 12;13(8):1433. doi: 10.3390/genes13081433. PMID: 36011344; PMCID: PMC9407948.

  9. A Kumar, PK Jayaswal, AK Mahato, A Arya, PK Mandal, NK Singh, SK Sinha (2022). Growth stage and nitrate limiting response of NRT2 and NAR2 gene families of bread wheat, and complementation and retrieval of nitrate uptake of atnrt2. 1 mutant by a wheat NRT2 gene.Environmental and Experimental Botany. https://doi.org/10.1016/j.envexpbot.2022.105205.

  10. F Zhao, S Tian, Q Wu, Z Li, L Ye, Y Zhuang, M Wang, Y Xie, S Zou, W Teng, Y Tong, D Tang, AK Mahato, M Benhamed, Z Liu, Y Zhang (2022). Utility of Triti-Map for bulk-segregated mapping of causal genes and regulatory elements in Triticeae. Plant Communications. https://doi.org/10.1016/j.xplc.2022.100304

  11. BD Prasad, S Sahni, P Krishna, D Kumari, AK Mahato, SJ Jambhulkar, P Kumar T Ranjan, AK Pal (2021). De Novo Transcriptome Assembly and Identification of Brassinosteroid Biosynthetic Pathway in Safflower. Journal of Plant Growth Regulation. https://doi.org/10.1007/s00344-021-10429-9

  12. M Srivasav, SK Singh, J Prakash, R Singh, N Sharma, R Sridhar, D Rajni, A Gupta, AK Mahato, PK jayaswal, S Singh, NK Singh (2021). New hyper-variable SSRs for diversity analysis in mango (Mangifera indica L.). Indian Journal of Genetics and Plant Breeding. DOI: DOI: 10.31742/IJGPB.81.1.13.

  13. S Ramachandra, M Srivastav,SK Singh, AK Mahato, N Singh, N Arumugam, R Singh, NK Singh (2021). New genomic markers for marker assisted breeding in mango (Mangifera indica L.). The Journal of Horticultural Science and Biotechnology. https://doi.org/10.1080/14620316.2021.1906760.

  14. S Singh, AK Mahato, S Singh, P Jayaswal, N Singh, M Dheer, P Goel, RS Raje, JK Yasin, R Sreevasthsa, V Rai, K Gaikwad, NK SIngh (2020). A 62K genic-SNP chip array for genetic studies and breeding applications in pigeonpea (Cajanus cajan L. Millsp.). Nature Scientific reports. https://doi.org/10.1038/s41598-020-61889-0

  15. A Singh, Y Singh, AK Mahato, P Jayaswal, S Singh, R Singh, N Yadav, AK Singh, PK Singh, R Singh, R Kumar, E M Septiningsih, HS Balyan, NK Singh,V Rai (2020). Allelic sequence variation in the Sub1A, Sub1B and Sub1C genes among diverse rice cultivars and its association with submergence tolerance. Nature Scientific reports. https://doi.org/10.1038/s41598-020-65588-8.

  16. MK Rajesh, P Chowdappa, SK Behra, S Kasaragod, KP Gangaraj, CN Kotimoole, B Nekrakalaya,V mohanty, RB Sampgod, G Banerjee, AJ Das,V Niral, A Karun, AK Mahato, et al (2020). Assembly and Annotation of the Nuclear and Organellar Genomes of a Dwarf Coconut (Chowghat Green Dwarf) Possessing Enhanced Disease Resistance. OMICS: A Journal of Integrative Biology. https://doi.org/10.1089/omi.2020.0147.

  17. N Sharma, AK Singh, S Singh, AK Mahato, M Srivastava, N K Singh (2020). Comparative RNA sequencing-based transcriptome profiling of regular bearing and alternate bearing mango (Mangifera indica L.) varieties reveals novel insights into the regulatory mechanisms underlying alternate bearing. Biotechnology Letters. https://doi.org/10.1007/s10529-020-02863-8.

  18. P Kaur, S Jindal S Yadav, B Yadav, AK Mahato, P Sharma et al (2020). Comparative analysis of chromosome 2A molecular organization in diploid and hexaploid wheat. Molecular Biology Reports. https://doi.org/10.1007/s11033-020-05295-9.

  19. Brown P; RELISH Consortium; Zhou Y et al. Large expert-curated database for benchmarking document similarity detection in biomedical literature search (2019). Database (Oxford). 1;2019:baz085. doi: 10.1093/database/baz085.

  20. M Rathinam, P Mishra, AK Mahato, NK Singh, U Rao, R Srivasthava (2019). Comparative transcriptome analyses provide novel insights into the differential response of Pigeonpea (Cajanus cajan L.) and its wild relative (Cajanus platycarpus (Benth.) Maesen) to herbivory by Helicoverpa armigera (Hübner). Plant molecular biology. https://doi.org/10.1007/s11103-019-00899-7.

  21. M Rani, AK Mahato, S Sinha, D dalal, NK Singh, et al. (2019). Homeologue Specific Gene Expression Analysis of Two Vital Carbon Metabolizing Enzymes—Citrate Synthase and NADP- Isocitrate Dehydrogenase—from Wheat (Triticum aestivum L.) Under Nitrogen Stress. Applied biochemistry and biotechnology. https://doi.org/10.1007/s12010-018-2912-2.

  22. N Sharma, S K Singh, AK Mahato, H Ravishankar, A K.Dubey, N K Singh (2019). Physiological and molecular basis of alternate bearing in perennial fruit crops. Scientia Horticulturae. https://doi.org/10.1016/J.SCIENTA.2018.08.021.

  23. M Rathinam, P Mishra, P Budhwar, AK Mahato, NK Singh, U Rao, R Srivasthava (2019). Comparative transcriptome analysis of pigeonpea, Cajanus cajan (L.) and one of its wild relatives Cajanus platycarpus (Benth.) Maesen. PloS ONE. https://doi.org/10.1371/journal.pone.0218731.

  24. K Singh, AK Mahato, P Jain, R Rathour, V Sharma, TR Sharma (2019). Comparative Genomics Reveals the High Copy Number Variation of a Retro Transposon in Different Magnaporthe Isolates. Frontiers in microbiology. https://doi.org/10.3389/fmicb.2019.00966.

  25. AK Mahato, AK Sharma, NK Singh (2019). Genome-wide characterization and expression patterns of chitinase genes in the pigeonpea (Cajanus cajan (L.) Millsp.) genome. Plant Omics. https://doi.org/10.21475/poj.12.02.19.p1825.

  26. AK Mahato, AK Sharma, TR Sharma, NK Singh (2018). An improved draft of the pigeonpea (Cajanus cajan (L.) Millsp.) genome. Data in Brief. https://doi.org/10.1016/j.dib.2017.11.066.

  27. Muti-national, Multi-author international consortium paper: co-author from India (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome. SCIENCE. https://doi.org/10.1126/science.aar7191.

  28. A Mithra, P Kandwal, PB Kale, C Prakash, MK Ramkumar, N Yadav, AK Mahato, S. V, Motilal Behera, Rupesh et al (2018). Whole Genome Characterization of a few EMS Induced Mutants of Upland Rice Variety Nagina 22 reveals staggeringly high frequency of SNPs with high phenotype plasticity. Frontiers in Plant Science. https://doi.org/10.3389/fpls.2018.01179.

  29. P Kaur, IS Yadav, B Yadav, AK Mahato, OP Gupta J Dolezel, NK Singh JP Khurana K Singh (2018). In silico annotation of 458 genes identified from comparative analysis of Full length cDNAs and NextGen Sequence of chromosome 2A of hexaploid wheat. Journal of Plant Biochemistry and Biotechnology. https://doi.org/10.1007/s13562-018-0460-z.

  30. D Sarkar, AK Mahato, P Satya, A Kundu,S Singh, PK Jayaswal, et.al (2017). The draft genome of corchorus olitorius cv. JRO-524 (Navin). Genomics Data. https://doi.org/10.1016/j.gdata.2017.05.007.

  31. AK Mahato, S Arora, S Singh, P Mandal, S Bhutani, et al (2017). A high-density intraspecific SNP linkage map of pigeonpea (Cajanas cajan L. Millsp.). PLoS ONE. https://doi.org/10.1371/journal.pone.0179747.

  32. N Sharma, SK Singh, J Prakash, AK Mahato, M Srivastav, A Singh, NK Singh (2017). Flowering gene and genomic region in fruit crops: A tool for future breeding. International Journal of Genomics and Data Mining. https://doi.org/10.29011/2577-0616.000108.

  33. PK Dash, R Rai, AK Mahato, NK Singh (2017). Transcriptome Landscape at different Developmental Stages of a Drought Tolerant cultivar of Flax (Linum usitatissimum). Frontiers in Chemistry. https://doi.org/10.3389/fchem.2017.00082.

  34. N Sharma, AK Singh, SK Singh, AK Mahato, M Srivastav, NK Singh (2017). Understand Bearing Habit in Mango. Current Trends in Biomedical Engineering & Biosciences. https://doi.org/10.19080/CTBEB.2017.07.555707.

  35. MA Iquebal, S Jaiswal, AK Mahato, PK. Jayaswal, UB Ungadi, N Kumar, et al (2017). MiSNPDb: a web-based genomic resources of tropical ecology fruit mango (Mangifera indica L.) for phylogeography and varietal differentiation. Nature Scientific Reports. https://doi.org/10.1038/s41598-017-14998-2.

  36. AK Mahato, N Sharma, A Singh, M Srivastav, Jaiprakash, SK Singh, AK Singh, TR Sharma, NK Singh (2016). Leaf Transcriptome Sequencing for Identifying Genic-SSR Markers and SNP Heterozygosity in Crossbred Mango Variety ‘Amrapali’ (Mangifera indica L.). PLoS ONE. https://doi.org/10.1371/journal.pone.0164325.

  37. E Goyal, AK Singh, RS Singh, AK Mahato, K Kumar (2016). De novo transcriptome sequencing and analysis of Hydrilla verticillata (Lf) Royle. Plant Omics. https://doi.org/10.21475/POJ.16.09.04.P7882.

  38. R Singh, R Kumar, AK Mahato, R Paliwal, AK Singh, S Kumar, SS Marla, AKumar, NK Singh (2016). De novo transcriptome sequencing facilitates genomic resource generation in Tinospora cordifolia. Functional & Integrative Genomics. https://doi.org/10.1007/s10142-016-0508-x.

  39. E Goyal, AK Singh, SR Singh, AK Mahato, S Chand,K Kumar (2016). Transcriptome profiling of the salt-stress response in Triticum aestivum cv. Kharchia Local. Nature Scientific Report. https://doi.org/10.1038/srep27752.

  40. R Paliwal, RKumar, DR Choudhury,AK Singh, S Kumar, A Kumar, KC Bhatt, R Singh, AK Mahato, NK Singh, R Singh (2016). Development of genomic simple sequence repeats (g- SSR) markers in Tinospora cordifolia and their application in diversity analyses. Plant Gene. https://doi.org/10.1016/J.PLGENE.2016.02.001.

  41. S Ray, PK Singh, DK Gupta, AK Mahato, C Sarkar, R Rathour, NK Singh, TR Sharma (2016). Analysis of Magnaporthe oryzae Genome Reveals a Fungal Effector, Which Is Able to Induce Resistance Response in Transgenic Rice Line Containing Resistance Gene, Pi54. Frontiers in Plant Science. https://doi.org/10.3389/fpls.2016.01140.

  42. NK Singh, AK Mahato, PK Jayaswal, A Singh, S Singh, N Singh, et.al (2016). Origin, Diversity and Genome Sequence of Mango (Mangifera indica L.). Indian Journal of History of Science. https://doi.org/10.16943/IJHS%2F2016%2FV51I2.2%2F48449.

  43. P Kaur, M Verma, PK Chaduvula, S Saxena, N Baliyan, A Junaid, AK Mahato, NK Singh and K Gaikwad (2016). Insights into PPR Gene Family in Cajanus Cajan and Other Legume Species. Journal of Data Mining in Genomics & Proteomics. https://doi.org/10.4172/2153-0602.1000203.

  44. S Goel, N Nath, N Singh, S Grewal, AK Mahato, NK Singh (2015). Single nucleotide polymorphism in wheat triticin gene ('Tri 1') among diverse wild wheat species. Australian Journal of Crop Science. 9(12):1131-1138.

  45. N Sharma, SS Singh, NK Singh, M Srivastav, BP Singh, AK Mahato, JP Singh (2015). Differential Gene Expression Studies: A Possible way to understand Bearing habit in Fruit Crops. Transcriptomics. https://doi.org/10.4172/2329-8936.1000110.

  46. K Rajeshwari, U Beena, R Singh, G Tiwari, AK Mahato (2015). Multidrug Resistant Enteropathogenic E.Coli Diarrhea in Children. American Journal of Research Communication, 3(9) 27-48.

  47. A Meibum, A Tyagi, V Satheesh, AK Mahato, N Jain, RS Raje, AR Rao, K Gaikwad, NK Singh (2015). Genome-wide identification and characterization of heat shock factor genes from pigeonpea (Cajanus cajan), Molecular Plant Breeding. https://doi.org/10.5376/MPB.2015.06.0007.

  48. N Sharma, AK Singh, SK Singh, AK Mahato, M Srivastav, NK Singh (2014). Comparison of mango genomic DNA isolation methods for next generation sequencing. Indian Journal of Horticulture, 71(2):260-263.

  49. Muti-national, Multi-author international consortium paper: co- authors from India (2014). The tomato genome sequence provides insights into fleshy fruit evolution. NATURE. https://doi.org/10.1038/nature11119.

  50. P Danekar, A Tyagi, AK Mahato, KG Krishna, A Singh, RS Raje, K Gaikwad, NK Singh (2014). Genome wide characterization of Hsp 100 family genes from pigeonpea. The Indian Society of Genetics & Plant Breeding. https://doi.org/10.5958/0975-6906.2014.00850.5.

  51. Nimisha, D. Kherwar, AK Mahato, B. Singh,K. Usha (2013). Molecular breeding to improve guava (Psidium guajava L.): Current status and future prospective. Scientia Horticulturae. https://doi.org/10.1016/J.SCIENTA.2013.10.017.

  52. S Dutta, AK Mahato, P Sharma, RS Raje, TR Sharma, NK Singh (2013). Highly variable ‘Arhar’ simple sequence repeat markers for molecular diversity and phylogenetic studies in pigeonpea. Plant Breeding. https://doi.org/10.1111/PBR.12014.

  53. NK Singh, DK Gupta, PK Jayaswal, AK Mahato, S Dutta, S Singh, et. Al. (2012). The first draft of the pigeonpea genome sequence. Journal of Plant Biochemistry and Biotechnology. https://doi.org/10.1111/PBR.12014.

  54. A Singh, PK Singh, R Singh, A Pandit, AK Mahato, DK Gupta, K Tyagi, et al. (2010). SNP haplotypes of the BADH1 gene and their association with aroma in rice. Molecular Breeding. https://doi.org/10.1007/s11032-010-9425-1.

  55. Muti-national, Multi-author international consortium paper: (2009). A snapshot of the emerging tomato genome sequence. The Plant Genome. https://doi.org/10.3835/plantgenome2008.08.0005.

Book Chapters

  1. Singh NK, Mahato AK, Jayaswal PK (2021) The Genome Sequence and Transcriptome Studies in Mango (Mangifera indica L.). In: Kole C. (eds) The Mango Genome. Compendium of Plant Genomes. Springer, Cham. https://doi.org/10.1007/978-3-030-47829-2_10.

  2. Sharma TR, Srivastava K, Singh S, Mahato AK, Koundal KR (2007) Web based information resources on GMOs. Cartagena protocol on Biosafety: Decisions to diagnostics, NBPGR, New Delhi, India.
Contact Information
E-mail: akmahato<at>cdfd.org.in
Phone: +91-40-27216058
Fax: +91-40- 27216006
Last updated on: Wednesday 7thJune, 2023

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